miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|238139609|gb|GR007354.1|GR007354 ATGATTAGAGAAAGGAAAATATCTTTAGAAGATAAACTAGTAGAGTACATAAACAACAATCCCATCACAGCAGCAGACTA
ATTTTTCATTTTTTTTTTTCCTACTCCAGAAAATACCCCATTACAAAAAGAAAAAAAAAAGATATACCATTAAACAAAAG
GAAGGGAAACTATTTATCATCATAAAAGGGTAAACATAGTTGCGAGGGGATGGATTACATAATTTCATAAGCTTCCATTT
TTCATCTTCACTCGTCGTCGTCGTCATCATCATCATCGGGGCTGCCGTCCTCGTCATCATCGTCGTCTTCGTCATCGTTC
ACTTCCGACCTTGACTTGTCGGACTCCTCTTCTGTGGGCCCATCGCTCAATTTTTTGTTGTAAGCCTGAAGGGTTTTTTC
ATACTCGCCCTTTCGCTTCTCAGCCTTGGCTATGTAAGGAGCTTTTTCAGCTTCTGTGAGAGATTTCCACTTGTCACCAC
CAGCTTTCCCAACAGCGGCGACTGATTTGTTGTTTGGGTGCTTCTCTTTGTACGTTTTCCTGAAGTCCTCCATGA




Most similar to sp|P40619|HMGL_IPONI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
          Length = 144

 Score =  133 bits (335), Expect = 6e-31
 Identities = 67/80 (83%), Positives = 70/80 (87%), Gaps = 1/80 (1%)
 Frame = -3

Query: 553 MEDFRKTYKEKHPNNKSVAAVGKAGGDKWKSLTEAEKAPYIAKAEKRKGEYEKTLQAYNK 374
           MEDFRKTYKEKHPNNKSVA VGKAGGDKWK LT AEKAP+I+KAEKRK EYEK LQAYNK
Sbjct: 47  MEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNK 106

Query: 373 KLSDGPT-EEESDKSRSEVN 317
           K + G   EEESDKSRSEVN
Sbjct: 107 KQAAGAAEEEESDKSRSEVN 126